Tag: visualisation

import datetime
import requests
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt


# The prefixes, mainly to have them seperate 
PREFIXES = """
PREFIX schema: <http://schema.org/>
PREFIX hg: <http://rdf.histograph.io/>
PREFIX la: <https://linked.art/ns/terms/>
PREFIX ex: <http://example.org/>

# hydro related prefixes
PREFIX h: <https://environment.ld.admin.ch/foen/hydro/>
PREFIX hd: <https://environment.ld.admin.ch/foen/hydro/dimension/>
PREFIX hgs: <https://environment.ld.admin.ch/foen/hydro/station/>
PREFIX river: <https://environment.ld.admin.ch/foen/hydro/river/observation/>
PREFIX lake: <https://environment.ld.admin.ch/foen/hydro/lake/observation/>

# geo related prefixes
PREFIX wkt: <http://www.opengis.net/ont/geosparql#asWKT>

# hydrodata related prefixes (fake) that we use to reference to the historical data. haha.
PREFIX hydrodata: <https://www.hydrodaten.admin.ch/plots/>

"""


## a function that makes the response to a dataframe, tailored to the hydrodata
# and that also contains a small validation step to remove "outdated" values
def _response2dataframe(response,
                        validate=True,
                        time_threshold=datetime.timedelta(minutes=30)):
    # return pd.read_csv(io.StringIO(resp.text))
    data = response.text.strip().split('\n')
    columns = data[0].split(',')
    data = [i.strip().split(',') for i in data[1:]]
    index = [i[0] for i in data]
    ix = columns.index('data')
    values = [[i[0]] + i[ix].split(';') for i in data]
    data = [[j for _, j in enumerate(i) if _ != ix]
            for i in data]
    # the dataframe holding all non measurement values
    columns.pop(ix)
    data1 = pd.DataFrame(columns=columns,
                        data=data,
                        index=index)

    for col in data1.columns:
        data1[col] = pd.to_numeric(data1[col], errors='ignore')

    def _list2dict(datalist):
        return {i: j for i, j in zip(datalist[::2], datalist[1::2])}
    values = {i[0]: _list2dict(i[1:])
              for i in values}
    ix = values.keys()
    columns = []

    for i in values.items():

        vartypes = list(i[1].keys())

        for vartype in vartypes:
            if vartype in columns:
                pass
            else:
                columns.append(vartype)
    data = [[] for i in columns]

    for i in ix:
        for colno, colname in enumerate(columns):
            value = values[i][colname] if colname in values[i].keys() else ''
            data[colno].append(value)
    data = np.transpose(data)

    data2 = pd.DataFrame(columns=columns, data=data, index=ix)
    for col in data2.columns:
        if col != 'measurementTime':
            data2[col] = pd.to_numeric(data2[col], errors='coerce')

    data = pd.concat([data1, data2], axis=1)
    data['query_time'] = pd.to_datetime(data['query_time'])
    data['measurementTime'] = pd.to_datetime(data['measurementTime'])

    if validate:
        time_threshold = pd.to_timedelta(time_threshold)
        good = data['query_time'] <= data['measurementTime'] + time_threshold
        # for illustration
        bad = data['query_time'] >= data['measurementTime'] + time_threshold
        data['measurementAge'] = data['query_time'] - data['measurementTime']
        data = data[good]
    return data



def get_hydrodata(station_ids=None,
                  return_as_dataframe=True,
                  validate=True,
                  time_threshold=datetime.timedelta(minutes=30)):
    query = [
        """# what we want to get out of the query as "nicely" formatted data
       SELECT ?station_id ?station_name ?station_type ?station_type_nice
              ?latitude ?longitude ?station_iri ?station_data_iri ?station_geometry_iri
              (group_concat(?measurement_type_measurement_value;SEPARATOR=";") as ?data)
              ?query_time
              # add the https://hydrodaten.admin.ch url for the data that go back 7 days (actually 40 days sometimes, see dev console)
             (if(contains(?data,"discharge"), uri(concat(str(hydrodata:), 'p_q_7days/', ?station_id, '_p_q_7days_de.json')), "")
              as ?hydrodata_url_discharge_waterlevel)
             (if(contains(?data,"temp"), uri(concat(str(hydrodata:), 'temperature_7days/', ?station_id, '_temperature_7days_de.json')), "")
              as ?hydrodata_url_temperature)
       """
        # where part including initial setup of measurement types
        """
          WHERE { ?station ?prop ?value.
                 filter( ?prop in (ex:isLiter, hd:measurementTime, hd:waterTemperature,  hd:waterLevel, hd:discharge))
        """,
        # generating data and variables part
        """
        bind(replace(replace(
             str(?station), str(river:), "", "i"),
             str(lake:), "", "i")
            as ?station_id)
        # the above is equivalent to this in theory but the above uses prefixes so would be easier to change
        # in case of changes
        # bind(strafter(str(?station), "observation/") as ?station_id2)
        # get the kind of station this is (whether lake or river) - the hierarchy/ontology here is weird as all are measurement stations
        # or observation but the distinction is river/lake first then observation
        bind(strbefore(strafter(str(?station), str(h:)), "/") as ?station_type)
        # uppercase the first letter -> why is there no capitalize function in SPARQL :throw_table:
        bind(concat(ucase(substr(?station_type,1,1)), substr(?station_type,2,strlen(?station_type)-1)) as ?station_type_nice)
        # remove some filler words from the data
        bind(replace(str(?prop), str(hd:), "", "i") as ?measurement_type)
        # convert the actual measurement value to a literal
        bind(str(?value) as ?measurement_value)
        # introduce the time of the query to (maybe) see if the values are old
        bind( str(now()) as ?query_time)
        # combine the type of measurement with the value so we can group by and not loose information
        bind(concat(?measurement_type, ';', ?measurement_value, '') as ?measurement_type_measurement_value)

        # start making IRIs so we can check/link back to lindas
        # the IRI containing information of the station itself (not linked to river/lake)
        bind(IRI(concat(str(hgs:), ?station_id)) as ?station_iri)
        # generate the geometry IRI
        bind(IRI(concat(str(hgs:), concat(?station_id,"/geometry"))) as ?station_geometry_iri)
        # generate the station IRI that holds the data information
        bind(IRI(concat(str(h:), ?station_type, "/observation/", ?station_id)) as ?station_data_iri)
        # get the information about the location of the station
        ?station_geometry_iri wkt: ?coordinates.
        # also get the name
        ?station_iri schema:name ?stat_name.
        bind(replace(?stat_name, ',', ';') as ?station_name)

        # simplifiy the geometry to lon/lat in array form
        BIND(STRBEFORE(STRAFTER(STR(?coordinates), " "), ")") AS ?latitude)
        BIND(STRBEFORE(STRAFTER(STR(?coordinates), "("), " ") AS ?longitude)
    }""",

    # grouping part
    """
    group by # the station information
    ?station_id ?station_type ?station_type_nice ?station_name
    ?latitude ?longitude
    # the IRIs
    ?station_iri ?station_data_iri ?station_geometry_iri
    # validation information
    ?query_time
    """,
    # sorting part
    """
    order by ?station_id
    """

    ]
    if station_ids is not None:
        # per default, get all stations but if some stations are given uses
        # this modication instead
        station_ids = station_ids if isinstance(
            station_ids, list) else list(station_ids)

        station_ids = '"' + '","'.join([str(i) for i in station_ids]) + '"'
        query.insert(1, f'filter (?station_id in ({station_ids}))')

    query = PREFIXES + '\n'.join(query)
    resp = requests.post("https://ld.admin.ch/query",
                         data="query=" + query,
                         headers={
                             "Content-Type": "application/x-www-form-urlencoded; charset=utf-8",
                             "Accept": "text/csv"
                         }
                         )

    resp.encoding = "utf-8"

    if return_as_dataframe:
        resp = _response2dataframe(resp,
                                   validate=validate,
                                   time_threshold=time_threshold)

    return resp, query
    
if __name__ == '__main__':
    df, query = get_hydrodata()
    subset = [2091, 2613]
    df_subset, query_subset = get_hydrodata(station_ids=subset,
                                            return_as_dataframe=True)